colvarproxy_atoms Member List

This is the complete list of members for colvarproxy_atoms, including all inherited members.

add_atom_slot(int atom_id)	colvarproxy_atoms	protected
apply_atom_force(int index, cvm::rvector const &new_force)	colvarproxy_atoms	inline
atoms_charges	colvarproxy_atoms	protected
atoms_ids	colvarproxy_atoms	protected
atoms_masses	colvarproxy_atoms	protected
atoms_max_applied_force_	colvarproxy_atoms	protected
atoms_max_applied_force_id_	colvarproxy_atoms	protected
atoms_new_colvar_forces	colvarproxy_atoms	protected
atoms_positions	colvarproxy_atoms	protected
atoms_refcount	colvarproxy_atoms	protected
atoms_rms_applied_force_	colvarproxy_atoms	protected
atoms_total_forces	colvarproxy_atoms	protected
check_atom_id(int atom_number)	colvarproxy_atoms	virtual
check_atom_id(cvm::residue_id const &residue, std::string const &atom_name, std::string const &segment_id)	colvarproxy_atoms	virtual
check_atom_name_selections_available()	colvarproxy_atoms	virtual
clear_atom(int index)	colvarproxy_atoms	virtual
colvarproxy_atoms()	colvarproxy_atoms
compute_max_atoms_applied_force()	colvarproxy_atoms
compute_rms_atoms_applied_force()	colvarproxy_atoms
get_atom_applied_forces() const (defined in colvarproxy_atoms)	colvarproxy_atoms	inline
get_atom_charge(int index) const	colvarproxy_atoms	inline
get_atom_charges() (defined in colvarproxy_atoms)	colvarproxy_atoms	inline
get_atom_id(int index) const	colvarproxy_atoms	inline
get_atom_ids() const (defined in colvarproxy_atoms)	colvarproxy_atoms	inline
get_atom_mass(int index) const	colvarproxy_atoms	inline
get_atom_masses() const (defined in colvarproxy_atoms)	colvarproxy_atoms	inline
get_atom_position(int index) const	colvarproxy_atoms	inline
get_atom_positions() const (defined in colvarproxy_atoms)	colvarproxy_atoms	inline
get_atom_total_force(int index) const	colvarproxy_atoms	inline
get_atom_total_forces() const (defined in colvarproxy_atoms)	colvarproxy_atoms	inline
get_atom_velocity(int)	colvarproxy_atoms	inline
get_num_active_atoms() const	colvarproxy_atoms
increase_refcount(int index)	colvarproxy_atoms	inline
init_atom(int atom_number)	colvarproxy_atoms	virtual
init_atom(cvm::residue_id const &residue, std::string const &atom_name, std::string const &segment_id)	colvarproxy_atoms	virtual
max_atoms_applied_force() const	colvarproxy_atoms	inline
max_atoms_applied_force_id() const	colvarproxy_atoms	inline
modified_atom_list() const	colvarproxy_atoms	inline
modified_atom_list_	colvarproxy_atoms	protected
modify_atom_applied_forces() (defined in colvarproxy_atoms)	colvarproxy_atoms	inline
modify_atom_charges() (defined in colvarproxy_atoms)	colvarproxy_atoms	inline
modify_atom_masses() (defined in colvarproxy_atoms)	colvarproxy_atoms	inline
modify_atom_positions() (defined in colvarproxy_atoms)	colvarproxy_atoms	inline
modify_atom_total_forces() (defined in colvarproxy_atoms)	colvarproxy_atoms	inline
reset()	colvarproxy_atoms
reset_modified_atom_list()	colvarproxy_atoms	inline
rms_atoms_applied_force() const	colvarproxy_atoms	inline
updated_charges() const	colvarproxy_atoms	inline
updated_charges_ (defined in colvarproxy_atoms)	colvarproxy_atoms	protected
updated_masses() const	colvarproxy_atoms	inline
updated_masses_	colvarproxy_atoms	protected
~colvarproxy_atoms()	colvarproxy_atoms	virtual