Collective Variables Module - Developer Documentation
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colvarproxy_atoms Member List

This is the complete list of members for colvarproxy_atoms, including all inherited members.

add_atom_slot(int atom_id)colvarproxy_atomsprotected
apply_atom_force(int index, cvm::rvector const &new_force)colvarproxy_atomsinline
atoms_chargescolvarproxy_atomsprotected
atoms_idscolvarproxy_atomsprotected
atoms_massescolvarproxy_atomsprotected
atoms_max_applied_force_colvarproxy_atomsprotected
atoms_max_applied_force_id_colvarproxy_atomsprotected
atoms_new_colvar_forcescolvarproxy_atomsprotected
atoms_positionscolvarproxy_atomsprotected
atoms_refcountcolvarproxy_atomsprotected
atoms_rms_applied_force_colvarproxy_atomsprotected
atoms_total_forcescolvarproxy_atomsprotected
check_atom_id(int atom_number)colvarproxy_atomsvirtual
check_atom_id(cvm::residue_id const &residue, std::string const &atom_name, std::string const &segment_id)colvarproxy_atomsvirtual
check_atom_name_selections_available()colvarproxy_atomsvirtual
clear_atom(int index)colvarproxy_atomsvirtual
colvarproxy_atoms()colvarproxy_atoms
compute_max_atoms_applied_force()colvarproxy_atoms
compute_rms_atoms_applied_force()colvarproxy_atoms
get_atom_applied_forces() const (defined in colvarproxy_atoms)colvarproxy_atomsinline
get_atom_charge(int index) constcolvarproxy_atomsinline
get_atom_charges() (defined in colvarproxy_atoms)colvarproxy_atomsinline
get_atom_id(int index) constcolvarproxy_atomsinline
get_atom_ids() const (defined in colvarproxy_atoms)colvarproxy_atomsinline
get_atom_mass(int index) constcolvarproxy_atomsinline
get_atom_masses() const (defined in colvarproxy_atoms)colvarproxy_atomsinline
get_atom_position(int index) constcolvarproxy_atomsinline
get_atom_positions() const (defined in colvarproxy_atoms)colvarproxy_atomsinline
get_atom_total_force(int index) constcolvarproxy_atomsinline
get_atom_total_forces() const (defined in colvarproxy_atoms)colvarproxy_atomsinline
get_atom_velocity(int)colvarproxy_atomsinline
get_num_active_atoms() constcolvarproxy_atoms
increase_refcount(int index)colvarproxy_atomsinline
init_atom(int atom_number)colvarproxy_atomsvirtual
init_atom(cvm::residue_id const &residue, std::string const &atom_name, std::string const &segment_id)colvarproxy_atomsvirtual
max_atoms_applied_force() constcolvarproxy_atomsinline
max_atoms_applied_force_id() constcolvarproxy_atomsinline
modified_atom_list() constcolvarproxy_atomsinline
modified_atom_list_colvarproxy_atomsprotected
modify_atom_applied_forces() (defined in colvarproxy_atoms)colvarproxy_atomsinline
modify_atom_charges() (defined in colvarproxy_atoms)colvarproxy_atomsinline
modify_atom_masses() (defined in colvarproxy_atoms)colvarproxy_atomsinline
modify_atom_positions() (defined in colvarproxy_atoms)colvarproxy_atomsinline
modify_atom_total_forces() (defined in colvarproxy_atoms)colvarproxy_atomsinline
reset()colvarproxy_atoms
reset_modified_atom_list()colvarproxy_atomsinline
rms_atoms_applied_force() constcolvarproxy_atomsinline
updated_charges() constcolvarproxy_atomsinline
updated_charges_ (defined in colvarproxy_atoms)colvarproxy_atomsprotected
updated_masses() constcolvarproxy_atomsinline
updated_masses_colvarproxy_atomsprotected
~colvarproxy_atoms()colvarproxy_atomsvirtual