Collective Variables Module - Developer Documentation
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colvarproxy_atoms Member List
This is the complete list of members for
colvarproxy_atoms
, including all inherited members.
add_atom_slot
(int atom_id)
colvarproxy_atoms
protected
apply_atom_force
(int index, cvm::rvector const &new_force)
colvarproxy_atoms
inline
atoms_charges
colvarproxy_atoms
protected
atoms_ids
colvarproxy_atoms
protected
atoms_masses
colvarproxy_atoms
protected
atoms_max_applied_force_
colvarproxy_atoms
protected
atoms_max_applied_force_id_
colvarproxy_atoms
protected
atoms_new_colvar_forces
colvarproxy_atoms
protected
atoms_positions
colvarproxy_atoms
protected
atoms_refcount
colvarproxy_atoms
protected
atoms_rms_applied_force_
colvarproxy_atoms
protected
atoms_total_forces
colvarproxy_atoms
protected
check_atom_id
(int atom_number)
colvarproxy_atoms
virtual
check_atom_id
(cvm::residue_id const &residue, std::string const &atom_name, std::string const &segment_id)
colvarproxy_atoms
virtual
check_atom_name_selections_available
()
colvarproxy_atoms
virtual
clear_atom
(int index)
colvarproxy_atoms
virtual
colvarproxy_atoms
()
colvarproxy_atoms
compute_max_atoms_applied_force
()
colvarproxy_atoms
compute_rms_atoms_applied_force
()
colvarproxy_atoms
get_atom_applied_forces
() const (defined in
colvarproxy_atoms
)
colvarproxy_atoms
inline
get_atom_charge
(int index) const
colvarproxy_atoms
inline
get_atom_charges
() (defined in
colvarproxy_atoms
)
colvarproxy_atoms
inline
get_atom_id
(int index) const
colvarproxy_atoms
inline
get_atom_ids
() const (defined in
colvarproxy_atoms
)
colvarproxy_atoms
inline
get_atom_mass
(int index) const
colvarproxy_atoms
inline
get_atom_masses
() const (defined in
colvarproxy_atoms
)
colvarproxy_atoms
inline
get_atom_position
(int index) const
colvarproxy_atoms
inline
get_atom_positions
() const (defined in
colvarproxy_atoms
)
colvarproxy_atoms
inline
get_atom_total_force
(int index) const
colvarproxy_atoms
inline
get_atom_total_forces
() const (defined in
colvarproxy_atoms
)
colvarproxy_atoms
inline
get_atom_velocity
(int)
colvarproxy_atoms
inline
get_num_active_atoms
() const
colvarproxy_atoms
increase_refcount
(int index)
colvarproxy_atoms
inline
init_atom
(int atom_number)
colvarproxy_atoms
virtual
init_atom
(cvm::residue_id const &residue, std::string const &atom_name, std::string const &segment_id)
colvarproxy_atoms
virtual
max_atoms_applied_force
() const
colvarproxy_atoms
inline
max_atoms_applied_force_id
() const
colvarproxy_atoms
inline
modified_atom_list
() const
colvarproxy_atoms
inline
modified_atom_list_
colvarproxy_atoms
protected
modify_atom_applied_forces
() (defined in
colvarproxy_atoms
)
colvarproxy_atoms
inline
modify_atom_charges
() (defined in
colvarproxy_atoms
)
colvarproxy_atoms
inline
modify_atom_masses
() (defined in
colvarproxy_atoms
)
colvarproxy_atoms
inline
modify_atom_positions
() (defined in
colvarproxy_atoms
)
colvarproxy_atoms
inline
modify_atom_total_forces
() (defined in
colvarproxy_atoms
)
colvarproxy_atoms
inline
reset
()
colvarproxy_atoms
reset_modified_atom_list
()
colvarproxy_atoms
inline
rms_atoms_applied_force
() const
colvarproxy_atoms
inline
updated_charges
() const
colvarproxy_atoms
inline
updated_charges_
(defined in
colvarproxy_atoms
)
colvarproxy_atoms
protected
updated_masses
() const
colvarproxy_atoms
inline
updated_masses_
colvarproxy_atoms
protected
~colvarproxy_atoms
()
colvarproxy_atoms
virtual
Generated on Fri Jul 5 2024 14:58:29 for Collective Variables Module - Developer Documentation by
1.9.5