| accelMD_enabled() const (defined in colvarproxy_system) | colvarproxy_system | inlinevirtual |
| add_energy(cvm::real energy) | colvarproxy_system | virtual |
| angstrom_to_internal(cvm::real l) const | colvarproxy_system | inline |
| angstrom_value_ | colvarproxy_system | protected |
| apply_force_dE_dlambda(cvm::real *force) | colvarproxy_system | virtual |
| boltzmann() const | colvarproxy_system | inline |
| boltzmann_ | colvarproxy_system | protected |
| boundaries_non_periodic enum value (defined in colvarproxy_system) | colvarproxy_system | protected |
| boundaries_pbc_ortho enum value (defined in colvarproxy_system) | colvarproxy_system | protected |
| boundaries_pbc_triclinic enum value (defined in colvarproxy_system) | colvarproxy_system | protected |
| Boundaries_type enum name | colvarproxy_system | protected |
| boundaries_type | colvarproxy_system | protected |
| boundaries_unsupported enum value (defined in colvarproxy_system) | colvarproxy_system | protected |
| cached_alch_lambda | colvarproxy_system | protected |
| cached_alch_lambda_changed | colvarproxy_system | protected |
| colvarproxy_system() | colvarproxy_system | |
| dt() const | colvarproxy_system | inline |
| get_accelMD_factor() const | colvarproxy_system | inlinevirtual |
| get_alch_lambda(cvm::real *lambda) | colvarproxy_system | virtual |
| get_d2E_dlambda2(cvm::real *d2E_dlambda2) | colvarproxy_system | virtual |
| get_dE_dlambda(cvm::real *dE_dlambda) | colvarproxy_system | virtual |
| get_molid(int &molid) | colvarproxy_system | virtual |
| indirect_lambda_biasing_force | colvarproxy_system | |
| internal_to_angstrom(cvm::real l) const | colvarproxy_system | inline |
| kcal_mol_value_ | colvarproxy_system | protected |
| position_distance(cvm::atom_pos const &pos1, cvm::atom_pos const &pos2) const | colvarproxy_system | virtual |
| position_distance_internal(cvm::atom_pos const &pos1, cvm::atom_pos const &pos2) const | colvarproxy_system | inline |
| position_distance_kernel(cvm::atom_pos const &pos1, cvm::atom_pos const &pos2, cvm::rvector const &a, cvm::rvector const &b, cvm::rvector const &c, cvm::rvector const &a_r, cvm::rvector const &b_r, cvm::rvector const &c_r, bool a_p=false, bool b_p=false, bool c_p=false) | colvarproxy_system | inlinestatic |
| rand_gaussian(void) | colvarproxy_system | virtual |
| reciprocal_cell_x | colvarproxy_system | protected |
| reciprocal_cell_y (defined in colvarproxy_system) | colvarproxy_system | protected |
| reciprocal_cell_z (defined in colvarproxy_system) | colvarproxy_system | protected |
| request_alch_energy_freq(int const) | colvarproxy_system | inlinevirtual |
| request_total_force(bool yesno) | colvarproxy_system | virtual |
| reset_pbc_lattice() | colvarproxy_system | |
| send_alch_lambda() | colvarproxy_system | virtual |
| set_alch_lambda(cvm::real lambda) | colvarproxy_system | |
| set_integration_timestep(cvm::real dt) | colvarproxy_system | virtual |
| set_target_temperature(cvm::real T) | colvarproxy_system | virtual |
| set_time_step_factor(int fact) | colvarproxy_system | virtual |
| set_unit_system(std::string const &units, bool check_only) | colvarproxy_system | virtual |
| target_temperature() const | colvarproxy_system | inline |
| target_temperature_ | colvarproxy_system | protected |
| time_step_factor() const | colvarproxy_system | inline |
| time_step_factor_ | colvarproxy_system | protected |
| timestep_ | colvarproxy_system | protected |
| total_force_requested | colvarproxy_system | protected |
| total_forces_enabled() const | colvarproxy_system | virtual |
| total_forces_same_step() const | colvarproxy_system | virtual |
| unit_cell_x | colvarproxy_system | protected |
| unit_cell_y (defined in colvarproxy_system) | colvarproxy_system | protected |
| unit_cell_z (defined in colvarproxy_system) | colvarproxy_system | protected |
| units | colvarproxy_system | |
| update_pbc_lattice() | colvarproxy_system | |
| use_internal_pbc() | colvarproxy_system | inline |
| use_internal_pbc_ | colvarproxy_system | protected |
| ~colvarproxy_system() | colvarproxy_system | virtual |
