This is the complete list of members for colvarmodule::rotation, including all inherited members.
| b_debug_gradients | colvarmodule::rotation | |
| build_correlation_matrix(std::vector< cvm::atom_pos > const &pos1, std::vector< cvm::atom_pos > const &pos2) | colvarmodule::rotation | protected |
| C | colvarmodule::rotation | private |
| calc_optimal_rotation(std::vector< atom_pos > const &pos1, std::vector< atom_pos > const &pos2) | colvarmodule::rotation | |
| calc_optimal_rotation_impl() | colvarmodule::rotation | protected |
| calc_optimal_rotation_soa(cvm::ag_vector_real_t const &pos1, cvm::ag_vector_real_t const &pos2, const size_t num_atoms_pos1, const size_t num_atoms_pos2) (defined in colvarmodule::rotation) | colvarmodule::rotation | |
| compute_overlap_matrix() | colvarmodule::rotation | protected |
| cos_theta(cvm::rvector const &axis) const | colvarmodule::rotation | inline |
| crossing_threshold | colvarmodule::rotation | static |
| cvm::atom_group (defined in colvarmodule::rotation) | colvarmodule::rotation | friend |
| dcos_theta_dq(cvm::rvector const &axis) const | colvarmodule::rotation | inline |
| debug_gradients(cvm::rotation &rot, const cvm::ag_vector_real_t &pos1, const cvm::ag_vector_real_t &pos2, const size_t num_atoms_pos1, const size_t num_atoms_pos2) | colvarmodule::rotation | |
| dspin_angle_dq(cvm::rvector const &axis) const | colvarmodule::rotation | inline |
| get_C() (defined in colvarmodule::rotation) | colvarmodule::rotation | inline |
| get_eigenvalues() (defined in colvarmodule::rotation) | colvarmodule::rotation | inline |
| get_eigenvectors() (defined in colvarmodule::rotation) | colvarmodule::rotation | inline |
| get_q() (defined in colvarmodule::rotation) | colvarmodule::rotation | inline |
| get_S() (defined in colvarmodule::rotation) | colvarmodule::rotation | inline |
| get_S_backup() (defined in colvarmodule::rotation) | colvarmodule::rotation | inline |
| init() | colvarmodule::rotation | |
| inverse() const | colvarmodule::rotation | inline |
| jacobi | colvarmodule::rotation | protected |
| matrix() const | colvarmodule::rotation | inline |
| monitor_crossings | colvarmodule::rotation | static |
| q | colvarmodule::rotation | |
| q_old | colvarmodule::rotation | protected |
| rotate(cvm::rvector const &v) const | colvarmodule::rotation | inline |
| rotation() | colvarmodule::rotation | |
| rotation(cvm::quaternion const &qi) | colvarmodule::rotation | |
| rotation(cvm::real angle, cvm::rvector const &axis) | colvarmodule::rotation | |
| rotation_derivative (defined in colvarmodule::rotation) | colvarmodule::rotation | friend |
| S | colvarmodule::rotation | private |
| S_backup | colvarmodule::rotation | private |
| S_eigval | colvarmodule::rotation | private |
| S_eigvec | colvarmodule::rotation | private |
| spin_angle(cvm::rvector const &axis) const | colvarmodule::rotation | inline |
| ~rotation() | colvarmodule::rotation | |
